Portrait of Srinivasan Venkatramanan

Srinivasan (Srini) Venkatramanan

Research Assistant Professor

Biocomplexity Institute, University of Virginia
946 Grady Avenue, Suite 100, Charlottesville, VA 22903

About

I am a Research Assistant Professor at the Biocomplexity Institute, University of Virginia, where I work on computational modeling and simulation for infectious disease forecasting and response. My work spans network science, stochastic processes, and — increasingly — agentic AI systems, applied to domains including epidemiology, human mobility, healthy buildings, and neuroscience. I have contributed to national collaborative efforts such as CDC FluSight and the Scenario Modeling Hubs, and have led or co-led several CSTE-, NIH-, and ARPA-H-funded projects on infectious disease epidemiology. I was a recipient of the Collaborative Excellence in Public Service Award in 2022 for my work supporting the Virginia Department of Health during its COVID-19 response. I have managed multiple academia-industry partnerships with Google, Metaculus, Kinsa Health, and Signature Science.

Research Interests

Areas

  • Computational modeling & simulation
  • Agentic AI systems
  • Network science
  • Stochastic processes

Domains

  • AI for science
  • Healthy buildings
  • Human mobility
  • Epidemiology
  • Forecasting
  • Neuroscience

Professional Experience

  • 09/2021 – nowResearch Assistant ProfessorBiocomplexity Institute, University of Virginia
  • 10/2018 – 09/2021Research ScientistBiocomplexity Institute & Initiative, University of Virginia
  • 12/2017 – 10/2018Computational Health Data ScientistBiocomplexity Institute, Virginia Tech
  • 02/2015 – 12/2017Postdoctoral AssociateBiocomplexity Institute, Virginia Tech
  • 05/2014 – 11/2014Research AssistantDept. of Information Engineering, Chinese University of Hong Kong
  • 05/2007 – 08/2007Student InternBell Research Labs India

Education

  • 08/2008 – 08/2014Ph.D., Electrical & Communication EngineeringIndian Institute of Science
  • 08/2004 – 06/2008B.E., Electronics & Communication EngineeringCollege of Engineering Guindy, Anna University
  • R. Datta, Z. Guan, . . ., SV, N. Ramakrishnan, and A. Vullikanti, “Agentic Framework for Epidemiological Modeling”, accepted at International Conference on Machine Learning (ICML), 2026
  • B. Espinoza, SV, A. S. Warren, B. L. Lewis, H. V. Poor, S. A. Levin, and M. V. Marathe, “Integrated framework to study genomic surveillance of selective sweeps in multivariants dynamics”, Proceedings of the National Academy of Sciences, 123(11), e2521031123, 2025
  • S. Mathis, A. Webber, . . ., SV, . . ., M. Biggerstaff, R. Borchering, “Evaluation of FluSight influenza forecasting in the 2021–22 and 2022–23 seasons with a new target laboratory-confirmed influenza hospitalizations”, Nature Communications 15.1, 6289, 2024
  • E. Howerton, L. Contamin, . . ., SV, . . ., K. Shea, C. Viboud, and J. Lessler, “Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty”, Nature Communications 14.1, 7260, 2023
  • B. Espinoza, A. Adiga, SV, A. S. Warren, . . ., S. Levin, and M. Marathe, “Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventions”, Proceedings of the National Academy of Sciences 120.48, e2305227120, 2023
  • P. V. Prasad, M. K. Steele, C. Reed, . . ., SV, . . ., and M. Biggerstaff, “Multimodeling approach to evaluating the efficacy of layering pharmaceutical and nonpharmaceutical interventions for influenza pandemics”, Proceedings of the National Academy of Sciences 120.28, e2300590120, 2023
  • P. Bhattacharya, J. Chen, S. Hoops, D. Machi, B. Lewis, SV, . . ., C. Barrett, and M. Marathe, “Data-Driven Scalable Pipeline using National Agent-Based Models for Real-time Pandemic Response and Decision Support”, The International Journal of High Performance Computing Applications (IJHPCA), 2022 Gordon Bell finalist
  • A. Adiga, G. Kaur, L. Wang, B. Hurt, P. Porebski, SV, B. Lewis, and M. Marathe, “Enhancing COVID-19 Ensemble Forecasting Model Performance Using Auxiliary Data Sources”, IEEE International Conference on Big Data (IEEE BigData), 2022 Best Paper Award
  • SV, A. Sadilek, A. Fadikar, . . ., L. Wang, and M. Marathe, “Forecasting influenza activity using machine-learned mobility map”, Nature Communications 12.1, 1–12, 2021
  • SV, J. Chen, A. Fadikar, S. Gupta, D. Higdon, B. Lewis, M. Marathe, H. Mortveit, and A. Vullikanti, “Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints”, PLOS Computational Biology 15.9, e1007111, 2019

Open Data & Software

IDOBE

Infectious Disease Outbreak forecasting Benchmark Ecosystem

github.com/NSSAC/IDOBE

PEpiTA

Phase-based Epidemic Time series Analyzer

github.com/NSSAC/PEpiTA
interactive version →

PatchSim

Metapopulation SEIR simulation engine

github.com/NSSAC/PatchSim

PatchFlow

Synthetic flow data for PatchSim

github.com/NSSAC/patchflow-data

Cryptic Scenario Modeling Hub

Synthetic outbreak data for pandemic cryptic phase modeling

github.com/midas-network/cryptic-scenario-modeling-hub

COVID-19 Flight Cancellations

Flight cancellations related to 2019-nCoV (COVID-19)

doi.org/10.18130/V3/Z6524P